PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.332450.7
Common NameCsa_1G697530, LOC101207910
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 296aa    MW: 31868.1 Da    PI: 7.5604
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.332450.7genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000331531911255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Cucsa.332450.7 153 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 191
                     6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.534141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.41E-6151195No hitNo description
Gene3DG3DSA:4.10.280.102.2E-7151198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-10151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGMFQSKKLE DWEEEILNSN NNNTQHQQQV DVKKEHSPHA SSYVYGHGGG GSGGGGVGGG  60
VGGDDYQLVA SKQNWSPMIQ SSSPQSCVTS FSSNMLDFSN NNNNNKSLAD HSRPRNPPQV  120
LDRSSECNSN VNGGAVKKAR VQSSSNQTTF KVRKEKLGDR ITALHQLVSP FGKTDTASVL  180
LEAIGYIRFL QSQIEALSLP YLGNTSGSTR QHQHQQHSLQ GERNCVFPED PGQLLNENCL  240
KRKGVSEQEE EGKKDLRSRG LCLVPVSCTL QVGSDNGADY WAPAFGGGGG GGVFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818118e-93LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBankLN7132568e-93LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142511.10.0PREDICTED: transcription factor bHLH68 isoform X1
SwissprotQ8S3D19e-81BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0A0M1200.0A0A0A0M120_CUCSA; Uncharacterized protein
STRINGVIT_11s0016g03560.t011e-121(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.15e-77bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]